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Chapter 1
Single subject DW-MRI Analysis
1.1
Data
1.2
Creation of a Diffusion MR (DMR) Project
1.2.1
DMR Properties
1.3
Exploring a DMR project
1.3.1
Creation of FA and Mean Diffusivity maps
1.4
DMR-VMR coregistration
1.4.1
VMR Preparation
1.4.2
Source Files
1.4.3
Source Options
1.4.4
Initial Alignment
1.4.5
Fine-Tuning Alignment
1.5
Creation of a Volume Diffusion Weighted (VDW) data set
1.6
Tensor, Diffusivity and FA calculation
1.6.1
The gradient table
1.6.2
Tensor, Mean Diffusivity and FA Computation
1.6.3
Recommended: masking the DDT data
1.6.4
Alternative Diffusion Measures
1.6.5
Color coded maps
1.7
Tensor visualization
1.8
Fiber Tracking
1.8.1
Interactive Fiber Tracking
1.8.2
Fiber tracking from seed regions (VOI/ROI)
1.8.3
Spatial Transformations of fibers
1.9
Statistical Analysis
1.9.1
VOI Statistics
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